STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplQRibosomal protein L17; COG: COG0203; Pfam: PF01196; InterPro: IPR000456. (112 aa)    
Predicted Functional Partners:
rpsL
Ribosomal protein S12; COG: COG0048; Pfam: PF00164; InterPro: IPR005679.
 
 
 0.999
rpsG
Ribosomal protein S7; COG: COG0049; Pfam: PF00177; InterPro: IPR000235.
  
 
 0.999
fusA
Translation elongation factor G; COG: COG0480; Pfam: PF00009,PF03144,PF03764,PF00679; InterPro: IPR004540.
 
 
 0.999
rpsJ
Ribosomal protein S10; COG: COG0051; Pfam: PF00338; InterPro: IPR005731.
  
 
 0.999
rplC
50S ribosomal protein L3; COG: COG0087; Pfam: PF00297; InterPro: IPR000597.
 
 
 0.999
rplD
50S ribosomal protein L4; COG: COG0088; Pfam: PF00573; InterPro: IPR002136.
 
 
 0.999
rplW
Ribosomal protein L23; COG: COG0089; Pfam: PF00276; InterPro: IPR012677.
  
 
 0.999
rplB
Ribosomal protein L2; COG: COG0090; Pfam: PF00181,PF03947; InterPro: IPR005880.
 
 
 0.999
rpsS
Ribosomal protein S19; COG: COG0185; Pfam: PF00203; InterPro: IPR005732.
 
 
 0.999
rplV
Ribosomal protein L22; COG: COG0091; Pfam: PF00237; InterPro: IPR001063.
 
 
 0.999
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.