STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppSDi-trans,poly-cis-decaprenylcistransferase; COG: COG0020; Pfam: PF01255; InterPro: IPR001441. (254 aa)    
Predicted Functional Partners:
cdsA
Phosphatidate cytidylyltransferase; COG: COG0575; Pfam: PF01148; InterPro: IPR000374.
 
  
 0.973
uppP
Undecaprenyl-diphosphatase UppP; COG: COG1968; Pfam: PF02673; InterPro: IPR003824.
     
 0.953
ispA
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949.
 
 
 0.952
frr
Ribosome recycling factor; COG: COG0233; Pfam: PF01765; InterPro: IPR015998.
  
  
 0.926
hepT
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR000092.
 
 
 0.923
pyrH
UMP kinase; COG: COG0528; Pfam: PF00696; InterPro: IPR001048.
  
  
 0.899
rseP
RIP metalloprotease RseP; COG: COG0750; Pfam: PF02163; InterPro: IPR004387.
  
  
 0.898
EEI18430.1
PAP2 family protein; COG: COG0671; Pfam: PF01569; InterPro: IPR000326.
   
 
 0.886
proS
proline--tRNA ligase; COG: COG0442; Pfam: PF00587,PF04073,PF03129; InterPro: IPR004500.
  
    0.883
nusA
Transcription termination factor NusA; COG: COG0195; Pfam: PF08529,PF00575; InterPro: IPR010213.
  
    0.795
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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