Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pepT-2Peptidase T; COG: COG2195; Pfam: PF01546,PF07687; InterPro: IPR010161. (412 aa)    
Predicted Functional Partners:
EEI18815.1
Dinuclear metal center protein, YbgI family; COG: COG0327; Pfam: PF01784; InterPro: IPR002678.
  
    0.801
EEI19831.1
Glutamate-cysteine ligase; COG: COG2918; Pfam: PF04262; InterPro: IPR007370.
     
 0.787
EEI18814.1
Hypothetical protein; COG: COG2384; Pfam: PF04816; InterPro: IPR006901.
  
    0.706
pepN
Peptidase family M1; COG: COG0308; Pfam: PF01433; InterPro: IPR001930.
     
 0.546
clpB
ATP-dependent chaperone protein ClpB; COG: COG0542; Pfam: PF02861,PF00004,PF07724; InterPro: IPR003593.
  
  
 0.535
rpoD
RNA polymerase sigma factor RpoD; COG: COG0568; Pfam: PF00140,PF04542,PF04539,PF04545; InterPro: IPR012760.
  
    0.517
dnaG
DNA primase; COG: COG0358; Pfam: PF01807,PF08275,PF01751; InterPro: IPR006295.
     
 0.483
glyA
Glycine hydroxymethyltransferase; COG: COG0112; Pfam: PF00464; InterPro: IPR001085.
   
 
 0.479
EEI18818.1
Hydrolase, alpha/beta domain protein; COG: COG2267.
       0.464
EEI20752.1
Creatinase; COG: COG0006; Pfam: PF01321,PF00557; InterPro: IPR000994.
   
 
 0.458
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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