STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ispAPolyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949. (307 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; COG: COG1570; Pfam: PF01336,PF02601; InterPro: IPR003753.
 
 
 0.959
uppS
Di-trans,poly-cis-decaprenylcistransferase; COG: COG0020; Pfam: PF01255; InterPro: IPR001441.
 
 
 0.952
xseB
Exodeoxyribonuclease VII, small subunit; Pfam: PF02609; InterPro: IPR003761.
 
  
 0.949
EEI18669.1
Putative ribosomal RNA large subunit methyltransferase J; COG: COG1189; Pfam: PF01479,PF01728; InterPro: IPR004538.
 
    0.941
mvaD
Diphosphomevalonate decarboxylase; COG: COG3407; Pfam: PF00288,PF08544; InterPro: IPR005935.
  
 0.924
fni
Isopentenyl-diphosphate delta-isomerase, type 2; COG: COG1304; Pfam: PF01645; InterPro: IPR011179.
  
 
 0.908
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; COG: COG0190; Pfam: PF00763,PF02882; InterPro: IPR000672.
 
    0.903
hepT
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR000092.
  
  
 
0.882
argR2
Arginine repressor, C-terminal domain protein; COG: COG1438; Pfam: PF01316,PF02863; InterPro: IPR001669.
     
 0.782
recN
DNA repair protein RecN; COG: COG0497; Pfam: PF02463; InterPro: IPR004604.
     
 0.733
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.