Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nrdERibonucleoside-diphosphate reductase, alpha subunit; COG: COG0209; Pfam: PF08343,PF00317,PF02867; InterPro: IPR013346. (721 aa)    
Predicted Functional Partners:
nrdF
Ribonucleoside-diphosphate reductase, beta subunit; COG: COG0208; Pfam: PF00268; InterPro: IPR000358.
 
 0.999
EEI18337.1
Glutaredoxin; COG: COG0695; Pfam: PF00462; InterPro: IPR012335.
 
 0.991
EEI19639.1
Putative nrdI protein; COG: COG1780; Pfam: PF07972; InterPro: IPR004465.
 
  
 0.973
tmk
dTMP kinase; COG: COG0125; Pfam: PF02223; InterPro: IPR000062.
  
 
 0.932
EEI19197.1
Adenylate kinase; COG: COG0563; Pfam: PF00406,PF05191; InterPro: IPR000850.
     
 0.879
cmk
Cytidylate kinase; COG: COG0283; Pfam: PF02224; InterPro: IPR003136.
   
 
 0.877
relA
RelA/SpoT family protein; COG: COG0317; Pfam: PF01966,PF04607,PF02824; InterPro: IPR004811.
   
 
  0.865
gmk1
Guanylate kinase; COG: COG0194; Pfam: PF00625.
     
 0.864
gmk
Guanylate kinase; COG: COG0194; Pfam: PF00625; InterPro: IPR008145.
     
 0.864
polA
DNA-directed DNA polymerase; COG: COG0749; Pfam: PF02739,PF01367,PF00476; InterPro: IPR002298.
  
 
 0.862
Your Current Organism:
Lactobacillus buchneri ATCC 11577
NCBI taxonomy Id: 525318
Other names: L. buchneri ATCC 11577, Lactobacillus buchneri str. ATCC 11577, Lactobacillus buchneri strain ATCC 11577
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