STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rexBPutative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase. (1160 aa)    
Predicted Functional Partners:
addA
ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
 
 0.998
EEJ73060.1
Hypothetical protein.
 
     0.878
EEJ73061.1
Hypothetical protein; COG: COG1199.
 
   
 0.840
EEJ73062.1
Exonuclease, DNA polymerase III, epsilon subunit family; COG: COG0847.
 
   
 0.831
mreD
Rod shape-determining protein MreD.
  
     0.722
EEJ72210.1
Hypothetical protein.
  
     0.720
EEJ72433.1
Hypothetical protein.
  
     0.702
EEJ71165.1
Hypothetical protein.
  
     0.701
tetR
Transcriptional regulator, TetR family.
  
     0.687
EEJ73058.1
DnaD domain protein; COG: COG3935.
 
     0.686
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.