STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ73069.1Cof-like hydrolase; COG: COG0561. (263 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; COG: COG0196; Belongs to the ribF family.
   
 0.913
EEJ72665.1
Nitroreductase family protein; COG: COG0778; Belongs to the flavin oxidoreductase frp family.
    
  0.906
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.884
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
    
 0.868
ribE
Riboflavin synthase, alpha subunit; COG: COG0307.
     
 0.867
EEJ73072.1
Hypothetical protein.
 
     0.806
EEJ72402.1
Cof-like hydrolase; COG: COG0561.
 
 
  0.801
EEJ73070.1
NOL1/NOP2/sun family protein; COG: COG0144.
       0.781
EEJ73071.1
Hypothetical protein.
       0.773
EEJ72415.1
Cof-like hydrolase; COG: COG0561.
 
     0.761
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.