STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufSCysteine desulfurase, SufS subfamily; COG: COG0520; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (412 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC; COG: COG0396.
  
 0.999
EEJ72510.1
SUF system FeS assembly protein, NifU family; COG: COG0822.
 0.999
sufB
FeS assembly protein SufB; COG: COG0719.
 
 0.998
sufD
FeS assembly protein SufD; COG: COG0719.
 
 0.996
EEJ72233.1
Transcriptional regulator, AraC family.
    
  0.942
trxB
Thioredoxin-disulfide reductase; COG: COG0492.
  
 
 0.910
trxB-2
Thioredoxin-disulfide reductase; COG: COG0492.
  
 
 0.910
EEJ72512.1
Hypothetical protein; COG: COG2151.
 
  
 0.847
mntH
Metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
    0.765
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.687
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.