STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmcShydroxymethylglutaryl-CoA synthase; COG: COG3425. (387 aa)    
Predicted Functional Partners:
thil
acetyl-CoA C-acetyltransferase; COG: COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.999
mvaA
hydroxymethylglutaryl-CoA reductase, degradative; COG: COG1257; Belongs to the HMG-CoA reductase family.
 
 0.999
mvaD
Diphosphomevalonate decarboxylase; COG: COG3407.
 
 
 0.931
mvk
Mevalonate kinase; COG: COG1577.
 
 
 0.927
EEJ73067.1
Phosphomevalonate kinase; COG: COG1577.
 
 
 0.917
pflB1
Formate C-acetyltransferase; COG: COG1882.
    
  0.892
EEJ72500.1
Formate C-acetyltransferase; COG: COG1882.
    
  0.892
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 
 0.873
acpP-2
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.866
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.866
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.