STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ72456.1Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (186 aa)    
Predicted Functional Partners:
EEJ72457.1
Hypothetical protein.
       0.845
EEJ72458.1
FtsK/SpoIIIE family protein; COG: COG1674; Belongs to the FtsK/SpoIIIE/SftA family.
       0.802
EEJ72459.1
Peptidase M16 inactive domain protein.
  
    0.802
EEJ72460.1
Peptidase, M16 family; COG: COG0612.
  
    0.797
EEJ72461.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028.
  
    0.777
EEJ72455.1
Hypothetical protein; COG: COG0628.
       0.661
EEJ72454.1
Hypothetical protein; 2.7.1.69.
       0.621
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COG: COG0558; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.618
EEJ72462.1
Hypothetical protein; COG: COG1426.
       0.613
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
      0.591
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.