STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ72045.1Type I restriction modification DNA specificity domain protein. (406 aa)    
Predicted Functional Partners:
hsdM
Type I restriction-modification system, M subunit; COG: COG0286.
 
   
 0.950
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.796
EEJ72047.1
Hypothetical protein.
 
   
 0.782
EEJ72046.1
Site-specific recombinase, phage integrase family; COG: COG0582; Belongs to the 'phage' integrase family.
 
     0.720
EEJ72560.1
Hypothetical protein.
    
  0.599
EEJ72943.1
Glycosyltransferase, group 2 family protein; COG: COG0463.
  
 
 0.553
EEJ72625.1
Glycosyltransferase, group 2 family protein; COG: COG0463.
  
 
 0.553
EEJ71588.1
Glycosyltransferase, group 2 family protein; COG: COG0463.
  
 
 0.553
epsV
Glycosyltransferase, group 2 family protein; COG: COG0463.
  
 
 0.553
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.480
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.