STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ71961.1Recombination factor protein RarA; COG: COG2256. (431 aa)    
Predicted Functional Partners:
EEJ71958.1
ABC transporter, permease protein; COG: COG1174.
       0.752
EEJ71959.1
ABC transporter, ATP-binding protein; COG: COG1125.
       0.752
EEJ71960.1
ABC transporter, permease protein; COG: COG1174.
       0.752
recQ
ATP-dependent DNA helicase RecQ; COG: COG0514.
  
 
 0.731
EEJ71957.1
ABC transporter, substrate-binding protein, QAT family; COG: COG1732.
       0.594
EEJ71964.1
Hypothetical protein.
       0.579
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 
 0.565
EEJ71962.1
Bacterial transferase hexapeptide repeat protein; COG: COG0110.
       0.558
pnbA
Para-nitrobenzyl esterase; COG: COG2272; Belongs to the type-B carboxylesterase/lipase family.
       0.558
EEJ71989.1
SNF2 family N-terminal domain protein; COG: COG0553.
  
 
 0.465
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.