STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ71962.1Bacterial transferase hexapeptide repeat protein; COG: COG0110. (186 aa)    
Predicted Functional Partners:
pnbA
Para-nitrobenzyl esterase; COG: COG2272; Belongs to the type-B carboxylesterase/lipase family.
  
    0.778
EEJ71964.1
Hypothetical protein.
       0.773
EEJ71961.1
Recombination factor protein RarA; COG: COG2256.
       0.558
EEJ71965.1
Hypothetical protein.
       0.556
EEJ71958.1
ABC transporter, permease protein; COG: COG1174.
       0.543
EEJ71959.1
ABC transporter, ATP-binding protein; COG: COG1125.
       0.543
EEJ71960.1
ABC transporter, permease protein; COG: COG1174.
       0.543
EEJ72233.1
Transcriptional regulator, AraC family.
  
  
 0.528
cysK
Cysteine synthase A; COG: COG0031; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 0.504
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.464
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.