Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEJ71464.1Peptidase propeptide and YPEB domain protein. (195 aa)    
Predicted Functional Partners:
EEJ71465.1
Hypothetical protein.
 
     0.646
EEJ71732.1
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
   
 0.520
EEJ73077.1
Hypothetical protein.
  
     0.504
EEJ72102.1
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.500
EEJ71466.1
Hypothetical protein.
       0.497
EEJ71877.1
Hypothetical protein.
  
    0.491
EEJ71875.1
Hypothetical protein.
  
    0.460
marR
Transcriptional regulator, MarR family.
 
     0.440
EEJ72765.1
Hypothetical protein.
  
     0.425
EEJ73110.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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