STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ71453.1Putative DNA/RNA non-specific endonuclease. (284 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.688
EEJ71454.1
Peptidase, C69 family; COG: COG4690.
       0.627
EEJ71451.1
Exonuclease, DNA polymerase III, epsilon subunit family; COG: COG2176.
       0.550
EEJ71450.1
Hypothetical protein.
       0.546
EEJ71448.1
Hypothetical protein.
       0.516
EEJ71449.1
Hypothetical protein; COG: COG2323.
       0.515
EEJ71564.1
Hypothetical protein.
  
     0.480
EEJ72205.1
DNA internalization competence protein ComEC/Rec2-like protein; COG: COG2333.
     
 0.479
EEJ71600.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.