STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ71084.1S1 RNA binding domain protein. (120 aa)    
Predicted Functional Partners:
bglP2
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263.
    
  0.940
treB
Phosphotransferase system, EIIC; COG: COG1263.
    
  0.940
scrA
PTS system sucrose-specific IIBC component; COG: COG1263.
    
  0.940
pyk
Pyruvate kinase; COG: COG0469; Belongs to the pyruvate kinase family.
    
  0.900
EEJ71083.1
Septum formation initiator.
  
  
 0.825
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.
  
    0.695
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
  
 
  0.666
pgi
Glucose-6-phosphate isomerase; COG: COG0166; Belongs to the GPI family.
    
  0.623
fba
Putative fructose-1,6-bisphosphate aldolase, class II; COG: COG0191.
   
 
  0.619
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.603
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.