STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msmFABC transporter, permease protein; COG: COG1175; Pfam: PF00528; InterPro: IPR000515. (301 aa)    
Predicted Functional Partners:
YcjP_3
ABC transporter, permease protein; COG: COG0395; Pfam: PF00528; InterPro: IPR000515.
 
 0.973
UgpC
ABC transporter, ATP-binding protein; COG: COG3839; Pfam: PF00005; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
 
 0.957
malD
ABC transporter, permease protein; COG: COG3833; Pfam: PF00528; InterPro: IPR000515.
 
 0.939
EFI84817.1
ABC transporter, permease protein; COG: COG0395; Pfam: PF00528; InterPro: IPR000515.
 
 0.907
CycB
ABC transporter, solute-binding protein; COG: COG1653; Pfam: PF01547; InterPro: IPR006059.
 
 0.903
EFI84820.1
ABC transporter, solute-binding protein; COG: COG1653; Pfam: PF01547; InterPro: IPR006059.
 
 
 0.875
ypcH
ABC transporter, permease protein; COG: COG0395; Pfam: PF00528; InterPro: IPR000515.
 
 
 0.857
mdxE
Maltodextrin-binding protein MdxE; COG: COG2182; Pfam: PF01547; InterPro: IPR006059.
 
 
 0.821
MalE
ABC transporter, solute-binding protein; COG: COG1653; Pfam: PF01547; InterPro: IPR006059.
 
 
 0.795
YcjP_2
ABC transporter, permease protein; COG: COG0395; Pfam: PF00528; InterPro: IPR000515.
 
0.725
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.