Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
potDABC transporter, solute-binding protein; COG: COG0687; Pfam: PF01547; InterPro: IPR006059. (357 aa)    
Predicted Functional Partners:
potC
ABC transporter, permease protein; COG: COG1177; Pfam: PF00528.
 0.999
potB
ABC transporter, permease protein; COG: COG1176; Pfam: PF00528.
 
 
 0.998
potA
ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.997
PuuR_2
DNA-binding helix-turn-helix protein; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR001387.
 
   
 0.745
HslR
S4 domain protein; COG: COG1188; Pfam: PF01479; InterPro: IPR002942.
   
    0.452
YbjG
PAP2 family protein; COG: COG0671; Pfam: PF01569; InterPro: IPR000326.
   
  
 0.451
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
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