STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zitBCation diffusion facilitator family transporter; COG: COG1230; Pfam: PF01545; InterPro: IPR002524. (298 aa)    
Predicted Functional Partners:
cadA
Cadmium-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
 
  
 0.645
CopZ
Heavy metal-associated domain protein; Pfam: PF00403; InterPro: IPR006121.
  
  
 0.598
EFI84712.1
Hypothetical protein.
       0.579
YidA_4
Cof-like hydrolase; COG: COG0561; Pfam: PF08282; InterPro: IPR000150.
       0.563
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
  
 0.541
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.522
Bm3R1_2
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR012287.
 
     0.445
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
    0.428
relA
RelA/SpoT domain protein; COG: COG2357; Pfam: PF04607; InterPro: IPR007685.
   
    0.412
dfr
Riboflavin biosynthesis protein RibD C-terminal domain protein; COG: COG0262; Pfam: PF01872.
       0.407
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.