STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmpI4-oxalocrotonate tautomerase family enzyme; COG: COG1942; Pfam: PF01361; InterPro: IPR004370; Belongs to the 4-oxalocrotonate tautomerase family. (61 aa)    
Predicted Functional Partners:
CatE
Glyoxalase family protein; COG: COG2514; Pfam: PF00903.
    
 0.914
EFI84724.1
Peptidase, M50 family; COG: COG1994; Pfam: PF02163; InterPro: IPR008915.
       0.609
YwiB
Hypothetical protein; Pfam: PF09148; InterPro: IPR015231.
 
     0.513
argS
arginine--tRNA ligase; COG: COG0018; Pfam: PF03485,PF00750,PF05746; InterPro: IPR001278.
       0.428
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.