Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFI82999.1Transcriptional regulator, GntR family; Pfam: PF00392; InterPro: IPR000524. (216 aa)    
Predicted Functional Partners:
EFI85287.1
VanZ-like protein; Pfam: PF04892.
  
     0.745
EFI84342.1
Cyclic nucleotide-binding domain protein; Pfam: PF00027; InterPro: IPR000595.
  
    0.741
EFI83175.1
Hypothetical protein.
  
     0.734
EFI83395.1
Hypothetical protein.
  
     0.648
EFI83225.1
CAAX amino terminal protease family protein; Pfam: PF02517.
  
    0.634
EFI83790.1
Hypothetical protein.
  
     0.631
EFI83164.1
SMI1 / KNR4 family protein.
  
     0.622
YppE
Hypothetical protein; Pfam: PF08807; InterPro: IPR014913.
  
     0.616
EFI84374.1
Hypothetical protein; Belongs to the HesB/IscA family.
  
     0.607
MutT
Hydrolase, NUDIX family; Pfam: PF00293; InterPro: IPR000086.
  
     0.597
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
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