STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFI82999.1Transcriptional regulator, GntR family; Pfam: PF00392; InterPro: IPR000524. (216 aa)    
Predicted Functional Partners:
EFI85287.1
VanZ-like protein; Pfam: PF04892.
  
     0.745
EFI84342.1
Cyclic nucleotide-binding domain protein; Pfam: PF00027; InterPro: IPR000595.
  
  
 0.741
EFI83175.1
Hypothetical protein.
  
     0.734
lytR
Transcriptional regulator LytR; COG: COG1316; Pfam: PF03816; InterPro: IPR004474.
   
  
 0.689
EFI83395.1
Hypothetical protein.
  
     0.648
EFI83225.1
CAAX amino terminal protease family protein; Pfam: PF02517.
  
    0.633
pip
YhgE/Pip domain protein; COG: COG1511; Pfam: PF01061.
  
  
 0.631
EFI83790.1
Hypothetical protein.
  
     0.631
EFI83164.1
SMI1 / KNR4 family protein.
  
     0.622
YppE
Hypothetical protein; Pfam: PF08807; InterPro: IPR014913.
  
     0.616
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.