STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UbiGMethyltransferase domain protein; COG: COG0500; Pfam: PF08242; InterPro: IPR013217. (244 aa)    
Predicted Functional Partners:
yhbY
RNA-binding protein, YhbY family; COG: COG1534; Pfam: PF01985; InterPro: IPR001890.
 
    0.733
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
    0.659
EFI83635.1
Hydrolase, HD family; COG: COG1713; Pfam: PF01966; InterPro: IPR005249.
  
    0.657
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
    0.641
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.602
yqeH
Ribosome biogenesis GTPase YqeH; COG: COG1161; Pfam: PF01926; InterPro: IPR002917.
  
    0.585
yqeG
HAD phosphatase, family IIIA; COG: COG2179; Pfam: PF00702; InterPro: IPR010021.
       0.578
celA
comEA protein; COG: COG1555; Pfam: PF00633; InterPro: IPR004509.
       0.558
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
    0.525
cap5F
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01073; InterPro: IPR016040.
  
  
 0.503
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.