Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YqfLHypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation. (273 aa)    
Predicted Functional Partners:
glyS
glycine--tRNA ligase, beta subunit; COG: COG0751; Pfam: PF02092,PF05746; InterPro: IPR015944.
 
    0.807
glyQ
glycine--tRNA ligase, alpha subunit; COG: COG0752; Pfam: PF02091; InterPro: IPR002310.
 
   
 0.731
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.709
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
  
 0.688
yqxD
YaiI/YqxD family protein; COG: COG1671; Pfam: PF02639; InterPro: IPR003791; Belongs to the UPF0178 family.
     
 0.679
EFI83669.1
Dinuclear metal center protein, YbgI family; COG: COG0327; Pfam: PF01784; InterPro: IPR002678; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
     0.604
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.520
TrmK
Hypothetical protein; COG: COG2384; Pfam: PF04816; InterPro: IPR006901.
       0.510
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.508
EFI84298.1
Hypothetical protein; COG: COG2706; InterPro: IPR015943.
   
    0.497
Your Current Organism:
Listeria grayi
NCBI taxonomy Id: 525367
Other names: L. grayi DSM 20601, Listeria grayi ATCC 19120, Listeria grayi DSM 20601, Listeria grayi str. DSM 20601, Listeria grayi strain DSM 20601
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