STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK60162.1Alpha-L-fucosidase; COG: COG3669; Pfam: PF01120; InterPro: IPR000933. (502 aa)    
Predicted Functional Partners:
nagZ4
Glycosyl hydrolase family 20, catalytic domain protein; COG: COG3525; Pfam: PF00728; InterPro: IPR001540.
 
   
 0.833
EFK60065.1
Hypothetical protein; 3.2.1.51.
  
     0.763
EFK58258.1
Hypothetical protein; 3.2.1.51.
  
  
  0.718
EFK59368.1
Alpha-L-fucosidase; COG: COG3669; Pfam: PF01120; InterPro: IPR000933.
 
  
 
0.667
EFK58259.1
F5/8 type C domain protein; Pfam: PF00754; InterPro: IPR000933.
 
  
 
0.664
EFK56549.1
Alpha-L-fucosidase; COG: COG3669; Pfam: PF01120; InterPro: IPR000933.
  
  
 
0.661
EFK59395.1
Alpha-L-fucosidase; Pfam: PF01120; InterPro: IPR000933.
  
  
 
0.614
EFK59365.1
Alpha-L-fucosidase; Pfam: PF01120; InterPro: IPR000933.
  
  
 
0.613
EFK59501.1
Glycosyl hydrolase family 2, sugar binding domain protein; Pfam: PF02837,PF00703,PF02836; InterPro: IPR013781; Belongs to the glycosyl hydrolase 2 family.
   
 0.590
EFK56776.1
Alpha-L-fucosidase; COG: COG3669; Pfam: PF01120; InterPro: IPR000933.
  
  
 
0.563
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.