STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiDN-acetylmuramoyl-L-alanine amidase; COG: COG0860; Pfam: PF01520; InterPro: IPR002508. (284 aa)    
Predicted Functional Partners:
EFK57241.1
Outer membrane lipoprotein carrier protein LolA; Pfam: PF03548.
    
   0.953
EFK58273.1
Hypothetical protein; 3.4.21.-.
 
   0.834
EFK59815.1
Peptidase, S54 family; Pfam: PF01694; InterPro: IPR002610.
  
   0.812
EFK59899.1
Peptidase, S54 family; Pfam: PF01694.
  
   0.812
EFK58272.1
Peptidase, S54 family; Pfam: PF01694; InterPro: IPR002610.
  
   0.812
EFK59211.1
Hypothetical protein; Pfam: PF02470; InterPro: IPR003399.
 
     0.766
cinA
Competence/damage-inducible domain protein CinA; COG: COG1058; Pfam: PF00994,PF02464; InterPro: IPR008135; Belongs to the CinA family.
 
   
 0.761
EFK60044.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; COG: COG1705; Pfam: PF01832,PF01476; InterPro: IPR013338.
  
 
 0.755
EFK57454.1
LysM domain protein; COG: COG0741; Pfam: PF01464,PF01476; InterPro: IPR008258.
 
  
 0.755
EFK58127.1
LysM domain protein; Pfam: PF01476; InterPro: IPR002482.
  
 
 0.742
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.