STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhgFTex-like protein N-terminal domain protein; COG: COG2183; Pfam: PF00575; InterPro: IPR006641. (745 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.990
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.981
EFK58535.1
Hypothetical protein.
    
 0.980
EFK58363.1
OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665.
    
 
 0.616
EFK58527.1
Tetratricopeptide repeat protein; COG: COG0457; Pfam: PF00515,PF07719; InterPro: IPR011990.
    
 
 0.612
EFK58150.1
Tetratricopeptide repeat protein; COG: COG0457; Pfam: PF00515; InterPro: IPR011990.
    
 
 0.612
EFK59570.1
Hypothetical protein.
    
 
 0.611
EFK59726.1
Tetratricopeptide repeat protein; Pfam: PF08281.
    
 
 0.611
EFK59035.1
Tetratricopeptide repeat protein; Pfam: PF00515.
    
 
 0.611
EFK58488.1
Tetratricopeptide repeat protein; Pfam: PF07719.
    
 
 0.611
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.