STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59221.1TonB-dependent receptor; Pfam: PF00593. (921 aa)    
Predicted Functional Partners:
EFK59220.1
Conserved hypothetical protein TIGR01200.
 
     0.939
EFK56513.1
Conserved hypothetical protein TIGR01200.
 
     0.754
EFK58290.1
TonB family domain protein.
  
   0.700
EFK55701.1
Hypothetical protein.
  
     0.590
EFK58929.1
TonB family domain protein.
  
   0.573
EFK57186.1
TonB-dependent receptor; Pfam: PF05569.
 
   0.567
EFK59560.1
Hypothetical protein.
  
     0.562
EFK58999.1
Hypothetical protein.
  
     0.533
EFK59201.1
TonB-dependent receptor; Pfam: PF03544.
  
   0.522
EFK57922.1
Hypothetical protein; Pfam: PF08522,PF02210; InterPro: IPR013728.
    
 
 0.520
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.