STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59316.1Hypothetical protein; COG: COG0730; Pfam: PF01925; InterPro: IPR002781. (265 aa)    
Predicted Functional Partners:
EFK59315.1
Metallo-beta-lactamase domain protein; COG: COG0491; Pfam: PF00753,PF00581; InterPro: IPR001279.
 
   
 0.878
EFK59317.1
Cyclic nucleotide-binding domain protein; Pfam: PF00027; InterPro: IPR014710.
 
     0.724
EFK59319.1
YeeE/YedE family protein; Pfam: PF04143; InterPro: IPR007272.
 
   
 0.713
EFK59318.1
YeeE/YedE family protein; Pfam: PF04143.
 
   
 0.712
EFK60158.1
Rhodanese-like protein; COG: COG0607; Pfam: PF00581; InterPro: IPR001763.
 
  
 0.525
EFK57950.1
Metallo-beta-lactamase domain protein; COG: COG0491; Pfam: PF00753,PF00581; InterPro: IPR001279.
 
  
 0.440
EFK59438.1
Trypsin; COG: COG0265; Pfam: PF00089.
    
 
 0.428
degQ
Peptidase Do; COG: COG0265; Pfam: PF00089,PF00595; InterPro: IPR011782.
    
 
 0.428
EFK56713.1
Hypothetical protein.
    
 
 0.428
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.