STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmoATat pathway signal sequence domain protein; COG: COG0437; Pfam: PF00037. (1001 aa)    
Predicted Functional Partners:
EFK59340.1
Hypothetical protein.
 
 
 0.999
nfrD
Polysulfide reductase, NrfD; Pfam: PF03916.
 
 0.999
EFK59345.1
Cytochrome C; Pfam: PF00034.
 
 
 0.999
EFK59341.1
Hypothetical protein; Pfam: PF00034.
 
 0.996
EFK59342.1
Hypothetical protein.
 
 0.996
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.969
EFK58135.1
Cytochrome C family protein; COG: COG2010; InterPro: IPR009056.
 
 0.942
ccoP
Putative cytochrome c oxidase, cbb3-type, subunit III; COG: COG2010; Pfam: PF00034; InterPro: IPR009056.
 
 0.939
gdhB
COG: COG2133; Pfam: PF07995,PF00034; InterPro: IPR011042.
  
 0.922
EFK56147.1
Cytochrome C; Pfam: PF00034.
  
 0.921
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.