Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFK59349.1 | EFK59350.1 | HMPREF0766_10266 | HMPREF0766_10267 | Putative alpha-1,2-mannosidase; COG: COG3537; Pfam: PF07971; InterPro: IPR005887. | Hypothetical protein. | 0.503 |
EFK59350.1 | EFK59349.1 | HMPREF0766_10267 | HMPREF0766_10266 | Hypothetical protein. | Putative alpha-1,2-mannosidase; COG: COG3537; Pfam: PF07971; InterPro: IPR005887. | 0.503 |
EFK59350.1 | EFK59427.1 | HMPREF0766_10267 | HMPREF0766_10344 | Hypothetical protein. | Hypothetical protein. | 0.537 |
EFK59350.1 | EFK59692.1 | HMPREF0766_10267 | HMPREF0766_10609 | Hypothetical protein. | Peptidase family M1; Pfam: PF01433. | 0.555 |
EFK59350.1 | EFK59836.1 | HMPREF0766_10267 | HMPREF0766_10753 | Hypothetical protein. | Tetratricopeptide repeat protein. | 0.464 |
EFK59350.1 | lipB | HMPREF0766_10267 | HMPREF0766_11839 | Hypothetical protein. | Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.436 |
EFK59350.1 | ppx | HMPREF0766_10267 | HMPREF0766_12847 | Hypothetical protein. | Cell shape determining protein, MreB/Mrl family; COG: COG1077; Pfam: PF06723; InterPro: IPR004753. | 0.419 |
EFK59427.1 | EFK59350.1 | HMPREF0766_10344 | HMPREF0766_10267 | Hypothetical protein. | Hypothetical protein. | 0.537 |
EFK59692.1 | EFK59350.1 | HMPREF0766_10609 | HMPREF0766_10267 | Peptidase family M1; Pfam: PF01433. | Hypothetical protein. | 0.555 |
EFK59836.1 | EFK59350.1 | HMPREF0766_10753 | HMPREF0766_10267 | Tetratricopeptide repeat protein. | Hypothetical protein. | 0.464 |
lipB | EFK59350.1 | HMPREF0766_11839 | HMPREF0766_10267 | Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | Hypothetical protein. | 0.436 |
ppx | EFK59350.1 | HMPREF0766_12847 | HMPREF0766_10267 | Cell shape determining protein, MreB/Mrl family; COG: COG1077; Pfam: PF06723; InterPro: IPR004753. | Hypothetical protein. | 0.419 |