STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59368.1Alpha-L-fucosidase; COG: COG3669; Pfam: PF01120; InterPro: IPR000933. (594 aa)    
Predicted Functional Partners:
EFK59365.1
Alpha-L-fucosidase; Pfam: PF01120; InterPro: IPR000933.
 
  
 
0.834
EFK58258.1
Hypothetical protein; 3.2.1.51.
  
  
  0.819
EFK59546.1
Hypothetical protein.
  
  
  0.779
EFK60065.1
Hypothetical protein; 3.2.1.51.
  
     0.772
EFK56468.1
Hypothetical protein.
  
  
  0.742
EFK56549.1
Alpha-L-fucosidase; COG: COG3669; Pfam: PF01120; InterPro: IPR000933.
  
  
 
0.731
EFK58259.1
F5/8 type C domain protein; Pfam: PF00754; InterPro: IPR000933.
 
  
 
0.727
EFK59367.1
BNR/Asp-box repeat protein; Pfam: PF02012.
    
  0.714
EFK59395.1
Alpha-L-fucosidase; Pfam: PF01120; InterPro: IPR000933.
  
  
 
0.690
xloA
Glycosyl hydrolase family 3 N-terminal domain protein; COG: COG1472; Pfam: PF00933,PF01915,PF07691; InterPro: IPR002772.
 
     0.683
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.