STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59398.1Carbohydrate binding module (family 6); Pfam: PF04616,PF03422; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family. (390 aa)    
Predicted Functional Partners:
gly43G
Glycosyl hydrolase, family 43; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
  
  0.869
yesX
FG-GAP repeat protein; Pfam: PF01839.
  
 
 0.676
xynB
Glycosyl hydrolase, family 43; COG: COG3507; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
  0.669
EFK56329.1
O-Glycosyl hydrolase family 30; COG: COG5520; Pfam: PF02055; InterPro: IPR001139.
 
 
 0.655
uxaC
Glucuronate isomerase; COG: COG1904; Pfam: PF02614; InterPro: IPR003766.
    
 0.605
uxaC-2
Glucuronate isomerase; COG: COG1904; Pfam: PF02614; InterPro: IPR003766.
    
 0.605
EFK59377.1
Hypothetical protein; 3.2.1.51.
 
  
  0.598
EFK59436.1
Glycosyl hydrolase, family 43; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.590
EFK59397.1
Hypothetical protein.
       0.565
EFK58258.1
Hypothetical protein; 3.2.1.51.
 
  
  0.564
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.