STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hepTPolyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949; Belongs to the FPP/GGPP synthase family. (323 aa)    
Predicted Functional Partners:
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.971
gds
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949; Belongs to the FPP/GGPP synthase family.
  
  
 
0.951
EFK57994.1
Putative 4-hydroxybenzoate polyprenyltransferase; COG: COG0382; Pfam: PF01040; InterPro: IPR006371; Belongs to the UbiA prenyltransferase family.
  
 
 0.951
crtB
Phytoene/squalene synthetase; COG: COG1562; Pfam: PF00494; InterPro: IPR002060.
  
 0.925
EFK59429.1
Integral membrane protein, TerC family; COG: COG0861; Pfam: PF03741; InterPro: IPR005496.
     
 0.799
EFK59427.1
Hypothetical protein.
 
     0.714
idi
Isopentenyl-diphosphate delta-isomerase; COG: COG1443; Pfam: PF00293; InterPro: IPR011876.
 
 
 0.627
EFK59426.1
Hypothetical protein.
   
 
 0.617
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
 
 0.560
lldD
Dehydrogenase, FMN-dependent; COG: COG1304; Pfam: PF01070; InterPro: IPR013785.
  
 
 0.540
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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