STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fahA2FAH family protein; COG: COG0179; Pfam: PF01557; InterPro: IPR011234. (327 aa)    
Predicted Functional Partners:
fahA3
FAH family protein; COG: COG0179; Pfam: PF01557; InterPro: IPR011234.
  
  
  0.920
hmgA
Homogentisate 1,2-dioxygenase; Pfam: PF04209; InterPro: IPR005708.
 
  
 0.889
EFK59451.1
Hypothetical protein; COG: COG1853; InterPro: IPR012349.
 
  
 0.813
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.783
sdhA
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; COG: COG1053; Pfam: PF00890,PF02910; InterPro: IPR011280.
  
 
  0.766
sdhA-2
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; COG: COG1053; Pfam: PF00890,PF02910; InterPro: IPR011280.
  
 
  0.766
frdB
Succinate dehydrogenase/fumarate reductase iron-sulfur subunit; COG: COG0479; Pfam: PF00111,PF00037; InterPro: IPR012675.
  
 
  0.743
frdB2
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Pfam: PF00037; InterPro: IPR012675.
  
 
  0.743
sdhC
Succinate dehydrogenase cytochrome B subunit, b558 family; InterPro: IPR011138.
    
  0.741
sdhC-2
Succinate dehydrogenase cytochrome B subunit, b558 family; InterPro: IPR011138.
    
  0.741
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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