STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59547.1Glycosyl hydrolase, family 88; Pfam: PF07470; InterPro: IPR012341. (418 aa)    
Predicted Functional Partners:
EFK59548.1
Tat pathway signal sequence domain protein; COG: COG4289.
 
     0.892
EFK59996.1
Hypothetical protein.
 
     0.708
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.569
EFK59546.1
Hypothetical protein.
       0.535
cslA2
Polysaccharide lyase family 8, super-sandwich domain protein; Pfam: PF08124,PF02278,PF02884; InterPro: IPR012329.
 
  
  0.482
EFK59549.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
       0.460
EFK59550.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
       0.460
EFK59551.1
Response regulator receiver domain protein; Pfam: PF07494,PF07495,PF00512,PF02518,PF00072,PF00165; InterPro: IPR003594.
 
     0.445
cslA
Polysaccharide lyase family 8, super-sandwich domain protein; Pfam: PF08124,PF02278,PF02884; InterPro: IPR012329.
 
  
  0.430
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.