STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59635.1Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990. (235 aa)    
Predicted Functional Partners:
tpn
OmpA family protein; COG: COG2885; Pfam: PF07719,PF07676,PF00691; InterPro: IPR006665.
 
  
 0.836
EFK57217.1
Putative ACR, COG1399; Pfam: PF02620.
  
    0.801
EFK58155.1
Hypothetical protein.
 
  
  0.785
EFK57696.1
Outer membrane protein, OMP85 family; Pfam: PF07244,PF01103; InterPro: IPR000184.
  
    0.777
EFK59205.1
Hypothetical protein; Pfam: PF04357.
 
   
 0.772
EFK59287.1
Hypothetical protein.
 
   
 0.756
EFK59675.1
Hypothetical protein.
  
     0.755
EFK60020.1
Hypothetical protein.
  
     0.748
EFK57146.1
DoxX family protein; Pfam: PF07681.
  
     0.734
EFK57750.1
Hypothetical protein.
  
     0.732
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.