STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59726.1Tetratricopeptide repeat protein; Pfam: PF08281. (586 aa)    
Predicted Functional Partners:
EFK57417.1
Response regulator receiver domain protein; Pfam: PF00072.
 
 0.915
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.893
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.890
EFK56121.1
Response regulator receiver domain protein; COG: COG0642; Pfam: PF05227,PF00672,PF00512,PF02518,PF00072; InterPro: IPR001789.
   
 0.868
uhpA
Response regulator receiver domain protein; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR001789.
  
 0.861
EFK59846.1
Response regulator receiver domain protein; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR001789.
  
 0.861
EFK58608.1
Transcriptional regulator, LuxR family; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR011991.
  
 0.861
EFK58797.1
Response regulator receiver domain protein; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR001789.
  
 0.861
vraR
Transcriptional regulator, LuxR family; Pfam: PF00196; InterPro: IPR011991.
  
 0.861
EFK57298.1
Response regulator receiver domain protein; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR001789.
  
 0.861
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.