STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59765.1PHP domain protein; COG: COG4464; Pfam: PF02811. (263 aa)    
Predicted Functional Partners:
EFK59748.1
Chain length determinant protein; COG: COG0489; Pfam: PF02706.
 
  
 0.874
EFK58374.1
Low molecular weight phosphotyrosine protein phosphatase; COG: COG0394; Pfam: PF01451; InterPro: IPR000106; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.743
EFK59749.1
Polysaccharide biosynthesis/export protein; Pfam: PF02563; InterPro: IPR003715.
 
     0.563
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
   0.511
pglC
Bacterial sugar transferase; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
 
  
 0.482
EFK59766.1
Hypothetical protein.
       0.454
EFK59690.1
Hypothetical protein; Pfam: PF07656.
    
   0.426
EFK57243.1
Hypothetical protein.
    
   0.426
EFK56625.1
Hypothetical protein.
    
   0.426
EFK56916.1
Hypothetical protein; Pfam: PF07656.
    
   0.426
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.