STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59769.1Hypothetical protein; COG: COG3712; Pfam: PF04773. (310 aa)    
Predicted Functional Partners:
EFK59768.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715; InterPro: IPR012910.
 
    0.828
EFK59578.1
RNA polymerase sigma-70 factor; Pfam: PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.804
EFK59767.1
Hypothetical protein.
 
     0.801
rpoE7
RNA polymerase sigma-70 factor; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.801
rpoE6
RNA polymerase sigma-70 factor; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.788
EFK56161.1
RNA polymerase sigma-70 factor; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.779
EFK57936.1
Sigma factor regulatory protein, FecR/PupR family; Pfam: PF04773; InterPro: IPR006860.
  
     0.774
EFK56874.1
RNA polymerase sigma-70 factor; Pfam: PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.770
EFK58300.1
RNA polymerase sigma-70 factor; Pfam: PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.763
EFK59770.1
RNA polymerase sigma-70 factor; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.745
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.