STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbpONucleotide sugar dehydrogenase; COG: COG0677; Pfam: PF03721,PF00984,PF03720; InterPro: IPR014028; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (432 aa)    
Predicted Functional Partners:
wbpP
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
 
 0.942
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
 
  0.791
rfbB-2
dTDP-glucose 4,6-dehydratase; COG: COG1088; Pfam: PF01370; InterPro: IPR005888; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.735
pglC
Bacterial sugar transferase; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
 
 0.726
pglE
DegT/DnrJ/EryC1/StrS aminotransferase family protein; COG: COG0399; Pfam: PF01041; InterPro: IPR000653; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.704
EFK59774.1
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.692
capD
Polysaccharide biosynthesis protein; COG: COG1086; Pfam: PF02719; InterPro: IPR003869.
  
 
 0.678
EFK59748.1
Chain length determinant protein; COG: COG0489; Pfam: PF02706.
  
 
 0.666
lpxA
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
    
 0.640
EFK59784.1
Polysaccharide biosynthesis protein; Pfam: PF01943; InterPro: IPR002797.
  
  
 0.632
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.