Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFK57331.1 | dnaN | HMPREF0766_12404 | HMPREF0766_10922 | Helicase C-terminal domain protein; COG: COG1061; Pfam: PF04851,PF00271; InterPro: IPR006935. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.829 |
| EFK57331.1 | ligD | HMPREF0766_12404 | HMPREF0766_10786 | Helicase C-terminal domain protein; COG: COG1061; Pfam: PF04851,PF00271; InterPro: IPR006935. | DNA ligase D; COG: COG1793; Pfam: PF01068,PF04679,PF01896; InterPro: IPR014143. | 0.880 |
| EFK57331.1 | polA | HMPREF0766_12404 | HMPREF0766_11917 | Helicase C-terminal domain protein; COG: COG1061; Pfam: PF04851,PF00271; InterPro: IPR006935. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.996 |
| EFK57331.1 | rpoA | HMPREF0766_12404 | HMPREF0766_10435 | Helicase C-terminal domain protein; COG: COG1061; Pfam: PF04851,PF00271; InterPro: IPR006935. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| EFK57847.1 | dnaN | HMPREF0766_12920 | HMPREF0766_10922 | Exonuclease SbcCD, C subunit; COG: COG0419. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.786 |
| EFK57847.1 | ligD | HMPREF0766_12920 | HMPREF0766_10786 | Exonuclease SbcCD, C subunit; COG: COG0419. | DNA ligase D; COG: COG1793; Pfam: PF01068,PF04679,PF01896; InterPro: IPR014143. | 0.924 |
| EFK57847.1 | polA | HMPREF0766_12920 | HMPREF0766_11917 | Exonuclease SbcCD, C subunit; COG: COG0419. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.983 |
| EFK57847.1 | rpoA | HMPREF0766_12920 | HMPREF0766_10435 | Exonuclease SbcCD, C subunit; COG: COG0419. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.466 |
| EFK59725.1 | dnaN | HMPREF0766_10642 | HMPREF0766_10922 | Endonuclease/exonuclease/phosphatase family protein; Pfam: PF03372. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.956 |
| EFK59725.1 | hisB | HMPREF0766_10642 | HMPREF0766_10325 | Endonuclease/exonuclease/phosphatase family protein; Pfam: PF03372. | Histidinol-phosphatase; COG: COG0131; Pfam: PF08645,PF00475; InterPro: IPR000807; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family. | 0.674 |
| EFK59725.1 | ligD | HMPREF0766_10642 | HMPREF0766_10786 | Endonuclease/exonuclease/phosphatase family protein; Pfam: PF03372. | DNA ligase D; COG: COG1793; Pfam: PF01068,PF04679,PF01896; InterPro: IPR014143. | 0.889 |
| EFK59725.1 | polA | HMPREF0766_10642 | HMPREF0766_11917 | Endonuclease/exonuclease/phosphatase family protein; Pfam: PF03372. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.936 |
| EFK59725.1 | polB | HMPREF0766_10642 | HMPREF0766_12851 | Endonuclease/exonuclease/phosphatase family protein; Pfam: PF03372. | PHP domain protein; COG: COG1387; Pfam: PF02811; InterPro: IPR004013. | 0.898 |
| EFK59725.1 | rpoA | HMPREF0766_10642 | HMPREF0766_10435 | Endonuclease/exonuclease/phosphatase family protein; Pfam: PF03372. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.484 |
| dnaN | EFK57331.1 | HMPREF0766_10922 | HMPREF0766_12404 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Helicase C-terminal domain protein; COG: COG1061; Pfam: PF04851,PF00271; InterPro: IPR006935. | 0.829 |
| dnaN | EFK57847.1 | HMPREF0766_10922 | HMPREF0766_12920 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exonuclease SbcCD, C subunit; COG: COG0419. | 0.786 |
| dnaN | EFK59725.1 | HMPREF0766_10922 | HMPREF0766_10642 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Endonuclease/exonuclease/phosphatase family protein; Pfam: PF03372. | 0.956 |
| dnaN | ligD | HMPREF0766_10922 | HMPREF0766_10786 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase D; COG: COG1793; Pfam: PF01068,PF04679,PF01896; InterPro: IPR014143. | 0.997 |
| dnaN | polA | HMPREF0766_10922 | HMPREF0766_11917 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| dnaN | polB | HMPREF0766_10922 | HMPREF0766_12851 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PHP domain protein; COG: COG1387; Pfam: PF02811; InterPro: IPR004013. | 0.915 |
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