STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhhWPirin family protein; COG: COG1741; Pfam: PF02678; InterPro: IPR012093; Belongs to the pirin family. (237 aa)    
Predicted Functional Partners:
ygiD
Aromatic ring-opening dioxygenase, catalytic subunit LigB; COG: COG3384; Pfam: PF02900; InterPro: IPR004183.
 
  
 0.567
alkH
Aldehyde dehydrogenase; COG: COG1012; Pfam: PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
     
 0.514
EFK56774.1
Pirin family protein; COG: COG1741; Pfam: PF02678,PF05726; InterPro: IPR012093; Belongs to the pirin family.
 
     0.482
EFK59878.1
TM2 domain protein; Pfam: PF05154; InterPro: IPR007829.
       0.465
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.