node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFK58535.1 | EFK59975.1 | HMPREF0766_11932 | HMPREF0766_10892 | Hypothetical protein. | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | 0.811 |
EFK58535.1 | rplC | HMPREF0766_11932 | HMPREF0766_10461 | Hypothetical protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.880 |
EFK58535.1 | rplS | HMPREF0766_11932 | HMPREF0766_12556 | Hypothetical protein. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.890 |
EFK58535.1 | rplT | HMPREF0766_11932 | HMPREF0766_13052 | Hypothetical protein. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.930 |
EFK58535.1 | rpmA | HMPREF0766_11932 | HMPREF0766_11310 | Hypothetical protein. | Ribosomal protein L27; COG: COG0211; Pfam: PF01016; InterPro: IPR001684; Belongs to the bacterial ribosomal protein bL27 family. | 0.938 |
EFK58535.1 | rpoA | HMPREF0766_11932 | HMPREF0766_10435 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
EFK58535.1 | rpoB | HMPREF0766_11932 | HMPREF0766_12305 | Hypothetical protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
EFK58535.1 | rpsE | HMPREF0766_11932 | HMPREF0766_10444 | Hypothetical protein. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.886 |
EFK58535.1 | rpsL | HMPREF0766_11932 | HMPREF0766_12809 | Hypothetical protein. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.983 |
EFK58535.1 | rpsQ | HMPREF0766_11932 | HMPREF0766_10452 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.977 |
EFK59975.1 | EFK58535.1 | HMPREF0766_10892 | HMPREF0766_11932 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | Hypothetical protein. | 0.811 |
EFK59975.1 | rplC | HMPREF0766_10892 | HMPREF0766_10461 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.673 |
EFK59975.1 | rplS | HMPREF0766_10892 | HMPREF0766_12556 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.693 |
EFK59975.1 | rplT | HMPREF0766_10892 | HMPREF0766_13052 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.699 |
EFK59975.1 | rpmA | HMPREF0766_10892 | HMPREF0766_11310 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | Ribosomal protein L27; COG: COG0211; Pfam: PF01016; InterPro: IPR001684; Belongs to the bacterial ribosomal protein bL27 family. | 0.694 |
EFK59975.1 | rpoA | HMPREF0766_10892 | HMPREF0766_10435 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.782 |
EFK59975.1 | rpoB | HMPREF0766_10892 | HMPREF0766_12305 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.805 |
EFK59975.1 | rpsE | HMPREF0766_10892 | HMPREF0766_10444 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.672 |
EFK59975.1 | rpsL | HMPREF0766_10892 | HMPREF0766_12809 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.684 |
EFK59975.1 | rpsQ | HMPREF0766_10892 | HMPREF0766_10452 | Cold-shock DNA-binding domain protein; Pfam: PF00313; InterPro: IPR012340. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.675 |