STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK60019.1Bacterial transferase hexapeptide repeat protein; COG: COG0663; Pfam: PF00132. (171 aa)    
Predicted Functional Partners:
cah
Carbonate dehydratase; COG: COG0288; Pfam: PF00484; InterPro: IPR001765.
    
 0.982
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.849
trxA
Thioredoxin; COG: COG0526; Pfam: PF00085; InterPro: IPR005746; Belongs to the thioredoxin family.
    
   0.454
EFK60052.1
Thioredoxin; Pfam: PF00085; InterPro: IPR012335.
    
   0.454
EFK59104.1
Glutaredoxin; Pfam: PF00462.
    
   0.454
trxA-2
Thioredoxin; COG: COG0526; Pfam: PF00085; InterPro: IPR012335; Belongs to the thioredoxin family.
    
   0.454
pglE
DegT/DnrJ/EryC1/StrS aminotransferase family protein; COG: COG0399; Pfam: PF01041; InterPro: IPR000653; Belongs to the DegT/DnrJ/EryC1 family.
    
 0.435
EFK59774.1
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
    
 0.435
ytxJ
Bacillithiol system protein YtxJ.
    
   0.434
cysE
Putative serine O-acetyltransferase; COG: COG1045; Pfam: PF00132.
    
 0.428
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.