STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK60026.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
sucA
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component; COG: COG0567; Pfam: PF00676,PF02779; InterPro: IPR011603.
    
 
 0.955
EFK55731.1
PASTA domain protein; Pfam: PF03793.
   
 
 0.941
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
    
   0.921
bfmBB
2-oxo acid dehydrogenase acyltransferase (catalytic domain); COG: COG0508; Pfam: PF00364,PF02817,PF00198; InterPro: IPR001078.
    
 
 0.850
pdhC
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; COG: COG0508; Pfam: PF00364,PF02817,PF00198; InterPro: IPR006257.
    
 
 0.850
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
 
 0.850
EFK56233.1
Regulator of chromosome condensation (RCC1); COG: COG5184; Pfam: PF00415; InterPro: IPR009091.
    
  0.806
EFK59264.1
Response regulator receiver domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072; InterPro: IPR001789.
  
 
 0.708
EFK59668.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072; InterPro: IPR003594.
  
 
 0.683
EFK56121.1
Response regulator receiver domain protein; COG: COG0642; Pfam: PF05227,PF00672,PF00512,PF02518,PF00072; InterPro: IPR001789.
  
 
 0.672
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.