STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK59179.1TonB-dependent receptor; Pfam: PF07715,PF00593; InterPro: IPR000531. (907 aa)    
Predicted Functional Partners:
EFK59178.1
Hypothetical protein.
 
     0.901
EFK57908.1
Hypothetical protein.
 
     0.790
EFK57922.1
Hypothetical protein; Pfam: PF08522,PF02210; InterPro: IPR013728.
    
 
 0.520
EFK57186.1
TonB-dependent receptor; Pfam: PF05569.
  
   0.503
EFK57565.1
TonB-dependent receptor; Pfam: PF00593; InterPro: IPR000531.
  
     0.460
EFK57702.1
Peptidase, M28 family; COG: COG2234; Pfam: PF04389; InterPro: IPR007484.
  
     0.448
EFK59196.1
TonB family domain protein.
   
   0.447
EFK59201.1
TonB-dependent receptor; Pfam: PF03544.
   
   0.447
tonB
TonB family domain protein.
   
   0.447
EFK58929.1
TonB family domain protein.
   
   0.447
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.