STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58908.1GtrA-like protein; Pfam: PF04138. (127 aa)    
Predicted Functional Partners:
EFK58910.1
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
     0.864
EFK58909.1
Hypothetical protein.
 
     0.860
EFK58911.1
Hypothetical protein.
 
     0.819
bioF
Putative 8-amino-7-oxononanoate synthase; COG: COG0156; Pfam: PF00155; InterPro: IPR004839.
 
   
 0.769
EFK56306.1
Hypothetical protein.
 
     0.695
EFK58473.1
Hypothetical protein.
 
     0.688
EFK57089.1
Hypothetical protein.
  
     0.660
EFK57088.1
Polysaccharide deacetylase; Pfam: PF01522.
 
     0.659
EFK55916.1
Inositol-3-phosphate synthase; COG: COG1260; Pfam: PF07994,PF01658; InterPro: IPR002587.
 
     0.638
EFK60115.1
Hypothetical protein.
  
     0.578
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.