STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioFPutative 8-amino-7-oxononanoate synthase; COG: COG0156; Pfam: PF00155; InterPro: IPR004839. (399 aa)    
Predicted Functional Partners:
bioF-2
8-amino-7-oxononanoate synthase; Pfam: PF00155; InterPro: IPR015421.
  
  
 
0.946
bioA
Adenosylmethionine-8-amino-7-oxononanoate transaminase; COG: COG0161; Pfam: PF00202; InterPro: IPR005815; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.936
EFK58911.1
Hypothetical protein.
 
   
 0.899
EFK58910.1
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
 
 0.867
EFK58457.1
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
 
 0.831
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
 
 0.811
EFK58909.1
Hypothetical protein.
 
     0.797
EFK58908.1
GtrA-like protein; Pfam: PF04138.
 
   
 0.769
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.736
bioF2
Aminotransferase, class I/II; COG: COG0156; Pfam: PF00155; InterPro: IPR004839.
  
  
 
0.726
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.