STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58931.1Transporter, MotA/TolQ/ExbB proton channel family protein; Pfam: PF01618. (233 aa)    
Predicted Functional Partners:
EFK58930.1
Transport energizing protein, ExbD/TolR family; Pfam: PF02472.
 
 
 0.992
EFK58929.1
TonB family domain protein.
 
 
 0.913
EFK59998.1
Hypothetical protein.
  
 
 0.887
EFK58492.1
Hypothetical protein.
  
 
 0.887
EFK58493.1
Hypothetical protein.
  
 
 0.887
EFK55888.1
Hypothetical protein.
  
 
 0.848
EFK57186.1
TonB-dependent receptor; Pfam: PF05569.
 
 
 0.844
EFK58934.1
Tetratricopeptide repeat protein; Pfam: PF00515; InterPro: IPR011990.
 
  
 0.804
EFK58932.1
Hypothetical protein.
       0.773
tonB
TonB family domain protein.
 
 
 0.765
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.