STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK58937.1Amino acid permease; COG: COG0531; Pfam: PF00324; InterPro: IPR004841. (464 aa)    
Predicted Functional Partners:
EFK56343.1
Hypothetical protein.
    
 0.817
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.658
upp
Phosphoribosyl transferase domain protein; COG: COG2065; Pfam: PF00156; InterPro: IPR000836.
       0.528
aroE
Putative shikimate dehydrogenase; COG: COG0169; Pfam: PF08501,PF01488; InterPro: IPR016040.
   
 0.506
cysK
Putative cystathionine beta-synthase; COG: COG0031; Pfam: PF00291,PF00571; InterPro: IPR001926.
     
 0.492
pyrB
Aspartate carbamoyltransferase; COG: COG0540; Pfam: PF02729,PF00185; InterPro: IPR002082; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.483
EFK56901.1
Leucine Rich Repeat protein; Pfam: PF00560.
    
 
 0.463
trpF
N-(5'phosphoribosyl)anthranilate isomerase; COG: COG0135; Pfam: PF00697; InterPro: IPR013785; Belongs to the TrpF family.
    
 
 0.443
pheA
Prephenate dehydratase; COG: COG0077; Pfam: PF00800; InterPro: IPR001086.
     
 0.433
malZ
Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family.
   
 0.429
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.